miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125592323|gb|EL554182.1|EL554182 AACTTACGGGGGTAATTTATTTAAGTACAGATTCAGTTACAAAATGATGTATCAGACACTGCAATTTGAAATGATTTGTT
ATTAAACCTTGTGAATATTTGATAAGACTAAATATAAGGCAAAGTAGCTTCCTGATTTATAGATCACAAATCCAAATGGA
ATCTTACTAAATTATAAGAAAGTGTTTTAGAAGTGAAAATGGCAACAACAAAAATTGTGGACAAATGATTTTTTTGTTTT
GTTTTAAAATGGCTCTCATGTAGGCTACATGACACTTTTCTCATGTAAAGAAGAACATATCAAATTGTAGATTGATCATT
GGATTGGTCCTCTAAGTGCTGCTTGCTGTTCAGTACCCAGGTGTTGTATCAGGCTTCTCAGGCAGATGTTCAGCTGAGCT
TTATGTGGGGGCAAACTTCTTGGCCTGCGCCCTCACCCTCTTCTCATAGTCCATTCTGTTCTGACAGTAAATTGTGTAGG
CTTCTGCTTGTGCAGGGTCTTGGATGTTGGGTTCATTGAGAAGCTCTTGGATACCCAACAGGATCTGTTTTATGGTGATG
GCTGGCCTCCAGTCCTTCTCCTCCTCCAGGATGGAAAGACACACCGTGCCAGATGGATAGACATTGGGGTGGAAAATGGG
TGGCTCAAACTTGCATTTCGGCGGCGAGGAAGGATAATCATCCTTGAACAGCATTCGGAGTTTGTATTGGCCTCCCTCCC
ACAGCGTCCCCTTCTTCCCCGGAATGGCACATTCCCAGTTCATG




Most similar to sp|Q28CQ4|UBC9_XENTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q28CQ4|UBC9_XENTR SUMO-conjugating enzyme UBC9 OS=Xenopus
           tropicalis GN=ube2i PE=2 SV=1
          Length = 158

 Score =  245 bits (625), Expect = 3e-64
 Identities = 112/120 (93%), Positives = 118/120 (98%)
 Frame = -2

Query: 763 MNWECAIPGKKGTLWEGGQYKLRMLFKDDYPSSPPKCKFEPPIFHPNVYPSGTVCLSILE 584
           MNWECAIPGKKGT WEGG +KLRMLFKDDYPSSPPKCKFEPP+FHPNVYPSGTVCLSILE
Sbjct: 39  MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 98

Query: 583 EEKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRMDYEKRVRAQAKKFAPT 404
           E+KDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNR++YEKRVRAQAKKFAP+
Sbjct: 99  EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 158